Package: fitPoly
Type: Package
Title: Genotype Calling for Bi-Allelic Marker Assays
Version: 4.0.0
Date: 2025-02-10
Authors@R: c(person(given = c("Roeland", "E."),
                    family = "Voorrips",
                    role = "aut"),
             person(given = "Gerrit",
                    family = "Gort",
                    role = "aut"),
             person(given = c("Alejandro"),
                    family = "Therese Navarro",
                    role = "aut"),
             person(given = "Giorgio",
                    family = "Tumino",
                    role = c("aut", "cre"),
                    email = "giorgio.tumino@wur.nl"))
Description: Genotyping assays for bi-allelic markers (e.g. SNPs)
        produce signal intensities for the two alleles. 'fitPoly'
        assigns genotypes (allele dosages) to a collection of polyploid
        samples based on these signal intensities. 'fitPoly' replaces
        the older package 'fitTetra' that was limited (a.o.) to only
        tetraploid populations whereas 'fitPoly' accepts any ploidy
        level. Reference: Voorrips RE, Gort G, Vosman B (2011)
        <doi:10.1186/1471-2105-12-172>. New functions added on
        conversion of data from SNP array software formats, drawing of
        XY-scatterplots with or without genotype colors, checking
        against expected F1 segregation patterns, comparing results
        from two different assays (probes) for the same SNP, recovery
        from a saveMarkerModels() crash.
License: GPL-2
Depends: R (>= 3.2.0)
Imports: foreach, devEMF, doParallel, grDevices
Suggests: knitr, rmarkdown
RoxygenNote: 7.3.1
VignetteBuilder: knitr
NeedsCompilation: no
Encoding: UTF-8
Packaged: 2026-06-21 11:04:40 UTC; root
Author: Roeland E. Voorrips [aut], Gerrit Gort [aut], Alejandro Therese
        Navarro [aut], Giorgio Tumino [aut, cre]
Maintainer: Giorgio Tumino <giorgio.tumino@wur.nl>
Config/pak/sysreqs: libfontconfig1-dev zlib1g-dev
Repository: https://gitumino.r-universe.dev
Date/Publication: 2025-02-13 12:42:05 UTC
RemoteUrl: https://github.com/cran/fitPoly
RemoteRef: HEAD
RemoteSha: 34eb841bf25908f32c58203bd5c0d57400adf1cf